Package org.jmol.thread
Class SpinThread
java.lang.Object
java.lang.Thread
org.jmol.thread.JmolThread
org.jmol.thread.SpinThread
- All Implemented Interfaces:
Runnable
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Thread
Thread.State, Thread.UncaughtExceptionHandler
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Field Summary
FieldsModifier and TypeFieldDescriptionprivate float
private javajs.util.BS
private javajs.util.BS[]
private float[]
private float
private javajs.util.Lst<javajs.util.P3>
private boolean
private int
private boolean
private boolean
private boolean
private javajs.util.M4
private float
private float
private TransformManager
Fields inherited from class org.jmol.thread.JmolThread
CHECK1, CHECK2, CHECK3, currentTime, eval, FINISH, haveReference, hoverEnabled, INIT, isJS, isReset, junk, lastRepaintTime, MAIN, name, sc, sleepTime, startTime, stopped, targetTime, useTimeout, vwr
Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprivate void
protected void
run1
(int mode) Java: run1(INIT) while(!interrupted()) { run1(MAIN) } run1(FINISH) JavaScript: run1(INIT) run1(MAIN) --> setTimeout to run1(CHECK) or run1(FINISH) and return run1(CHECK) --> setTimeout to run1(CHECK) or run1(MAIN) or run1(FINISH) and returnint
setManager
(Object manager, Viewer vwr, Object params) Methods inherited from class org.jmol.thread.JmolThread
checkInterrupted, interrupt, oops, reset, resumeEval, run, runSleep, setEval, setViewer, start, toString
Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, stop, suspend, yield
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Field Details
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transformManager
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endDegrees
private float endDegrees -
endPositions
private javajs.util.Lst<javajs.util.P3> endPositions -
dihedralList
private float[] dihedralList -
nDegrees
private float nDegrees -
bsAtoms
private javajs.util.BS bsAtoms -
isGesture
private boolean isGesture -
myFps
private float myFps -
angle
private float angle -
haveNotified
private boolean haveNotified -
index
private int index -
bsBranches
private javajs.util.BS[] bsBranches -
isDone
private boolean isDone -
m4
private javajs.util.M4 m4
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Constructor Details
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SpinThread
public SpinThread()
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Method Details
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setManager
- Overrides:
setManager
in classJmolThread
- Returns:
- TODO
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run1
Java: run1(INIT) while(!interrupted()) { run1(MAIN) } run1(FINISH) JavaScript: run1(INIT) run1(MAIN) --> setTimeout to run1(CHECK) or run1(FINISH) and return run1(CHECK) --> setTimeout to run1(CHECK) or run1(MAIN) or run1(FINISH) and return- Specified by:
run1
in classJmolThread
- Throws:
InterruptedException
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doTransform
private void doTransform()
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