Package org.jmol.modelset
Class HBond
java.lang.Object
org.jmol.util.Edge
org.jmol.modelset.Bond
org.jmol.modelset.HBond
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SimpleEdge
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Field Summary
FieldsModifier and TypeFieldDescription(package private) float
private static final double
Fields inherited from class org.jmol.modelset.Bond
atom1, atom2, colix, mad, myVisibilityFlag, shapeVisibilityFlags
Fields inherited from class org.jmol.util.Edge
BOND_AROMATIC, BOND_AROMATIC_DOUBLE, BOND_AROMATIC_MASK, BOND_AROMATIC_SINGLE, BOND_COVALENT_DOUBLE, BOND_COVALENT_MASK, BOND_COVALENT_QUADRUPLE, BOND_COVALENT_QUINTUPLE, BOND_COVALENT_sextuple, BOND_COVALENT_SINGLE, BOND_COVALENT_TRIPLE, BOND_H_CALC, BOND_H_CALC_MASK, BOND_H_MINUS_3, BOND_H_MINUS_4, BOND_H_NUCLEOTIDE, BOND_H_PLUS_2, BOND_H_PLUS_3, BOND_H_PLUS_4, BOND_H_PLUS_5, BOND_H_REGULAR, BOND_HBOND_SHIFT, BOND_HYDROGEN_MASK, BOND_NEW, BOND_ORDER_ANY, BOND_ORDER_NULL, BOND_ORDER_UNSPECIFIED, BOND_PARTIAL_MASK, BOND_PARTIAL01, BOND_PARTIAL12, BOND_PARTIAL23, BOND_PARTIAL32, BOND_PYMOL_MULT, BOND_PYMOL_NOMULT, BOND_RENDER_SINGLE, BOND_STEREO_FAR, BOND_STEREO_MASK, BOND_STEREO_NEAR, BOND_STRUT, BOND_SULFUR_MASK, index, order, TYPE_ATROPISOMER, TYPE_ATROPISOMER_REV
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.jmol.modelset.Bond
deleteAtomReferences, getAtom, getAtomIndex1, getAtomIndex2, getCIPChirality, getCovalentOrder, getIdentity, getOtherAtom, getOtherNode, getValence, is, isAromatic, isCovalent, isHydrogen, isPartial, isStereo, setAtropisomerOptions, setCIPChirality, setMad, setOrder, setShapeVisibility, setTranslucent, toString
Methods inherited from class org.jmol.util.Edge
getArgbHbondType, getAtropismNode, getAtropismOrder, getAtropismOrder12, getBondOrderFromFloat, getBondOrderFromString, getBondOrderNameFromOrder, getBondOrderNumberFromOrder, getBondType, getCmlBondOrder, getCovalentBondOrder, getPartialBondDotted, getPartialBondOrder, isAtropism, isOrderH
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Field Details
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energy
float energy -
QConst
private static final double QConst- See Also:
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Constructor Details
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HBond
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Method Details